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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33100399_33103843_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33100399 - 33103843
Intron Length:
3445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTGACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTGAAT
U12 Branch Point Sequence:
TTTTTCTTGACA
Flanking Amino Acid:
GLGGRRSKFTIFPHMVKKLN
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
65.8
0.39
1.4
75.7
36.5
Major PPT
86.3
0.82
0.9
84
31
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
85.2
1.1
0.9
90.04
24.3

Associated Gene:

Gene:
CLRN2
Ensembl Gene ID:
ENSAPLG00000007712
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007998
33100146 - 33104742
4597