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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33106870_33107342_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33106870 - 33107342
Intron Length:
473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TATCCTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTACATTAATG
Flanking Amino Acid:
RGYSREAGGKGLVLGAYSSE
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
76.4
0.6
0.8
69.5
36.4
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
67
0.4
1.7
73.63
38.6

Associated Gene:

Gene:
LAP3
Ensembl Gene ID:
ENSAPLG00000007431
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007751
33106780 - 33120233
13454