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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33107459_33107789_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33107459 - 33107789
Intron Length:
331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
TCTTGTGTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
CTTTACTGAAAG
Flanking Amino Acid:
VSGKLRELLSVCGPPLKKGK
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
78.2
36.4
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
77.8
0.63
0.9
72.9
37.4
Minor 5ss
40.6
-1
3.4
59
45.5
Minor BPS
53
-0
1.9
62.91
44.2

Associated Gene:

Gene:
LAP3
Ensembl Gene ID:
ENSAPLG00000007431
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007751
33106780 - 33120233
13454