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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33107845_33109253_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33107845 - 33109253
Intron Length:
1409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAATG
5'SS Class:
strong_major
3'SS Sequence:
TGGCTTTGCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
GGAAAATGAATC
Flanking Amino Acid:
KTYLFHGLHQDFPSVAVVGL
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
77.2
37.7
Major BPS
80
0.75
1
78.6
31
Major PPT
65.1
0.34
1
61.4
40
Minor 5ss
43.2
-0.7
2.9
57.1
47.2
Minor BPS
41.5
-0.6
1.7
45.65
35.2

Associated Gene:

Gene:
LAP3
Ensembl Gene ID:
ENSAPLG00000007431
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007751
33106780 - 33120233
13454