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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33113102_33113683_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33113102 - 33113683
Intron Length:
582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TCCAATTTAAAC
Flanking Amino Acid:
GFSSNVKVHIRPESWIATQQ
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
74.5
29.8
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
85
0.79
0.8
82.4
33.2
Minor 5ss
37.6
-1.4
3.2
49.9
46.6
Minor BPS
49.3
-0
1.7
56.98
41.5

Associated Gene:

Gene:
LAP3
Ensembl Gene ID:
ENSAPLG00000007431
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007751
33106780 - 33120233
13454