Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33117063_33118823_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

33117063 - 33118823

Intron Length:

1761

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCAGT

5'SS Class:

strong_major

3'SS Sequence:

TGTTTTTCTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTATAAT

U12 Branch Point Sequence:

TTTGCCTTCATT

Flanking Amino Acid:

RAIVNAATLTGAMDVALGSA

Intron Amino Acid Position:

390

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.5

0.95

0.9

81.8

38.5

Major BPS

70.1

0.5

1.3

72.3

40.4

Major PPT

85.3

0.79

0.7

81.6

30.4

Minor 5ss

41.1

-1

2.9

57.9

46.4

Minor BPS

68.9

0.68

1.8

87.41

38.9

Associated Gene:

Gene:

LAP3

Ensembl Gene ID:

ENSAPLG00000007431

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007751

33106780 - 33120233

13454