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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33119719_33119815_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33119719 - 33119815
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGATGTG
5'SS Class:
major
3'SS Sequence:
CTGCTTCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGTTTCTAAAGT
Flanking Amino Acid:
ADLSNIGKYSRAGGACTAAA
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
69.5
41.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
74.4
0.55
0.8
68.5
32
Minor 5ss
34.3
-1.8
3.6
48.2
47.9
Minor BPS
59.7
0.38
2
79.89
42.3

Associated Gene:

Gene:
LAP3
Ensembl Gene ID:
ENSAPLG00000007431
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007751
33106780 - 33120233
13454