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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33125359_33126053_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
33125359 - 33126053
Intron Length:
695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATAG
5'SS Class:
strong_major
3'SS Sequence:
TAAAAAACAGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCATGAT
U12 Branch Point Sequence:
TTTTCTGTCATG
Flanking Amino Acid:
TQGCLTPSTKKRPVEVPSRV
Intron Amino Acid Position:
688

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
77.7
33.3
Major BPS
72.1
0.55
1.1
62
44.2
Major PPT
50.8
0.02
1.1
42.8
41.4
Minor 5ss
37.3
-1.4
3
46.6
48.7
Minor BPS
48.6
-0.2
2.4
66.31
42.6

Associated Gene:

Gene:
FAM184B
Ensembl Gene ID:
ENSAPLG00000007157
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007430
33123557 - 33162279
38723