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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33126445_33131014_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33126445 - 33131014
Intron Length:
4570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGCCTT
5'SS Class:
major
3'SS Sequence:
TTCTTTCACACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
CTTTCTTTCACA
Flanking Amino Acid:
QLQDREKQLKRLNELEEKTR
Intron Amino Acid Position:
558

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.2
66.5
44.5
Major BPS
77.7
0.69
1
81
30.2
Major PPT
80.5
0.69
0.8
76.5
31.1
Minor 5ss
46.3
-0.4
2.8
65.7
45.4
Minor BPS
69.1
0.59
1.7
78.6
38.6

Associated Gene:

Gene:
FAM184B
Ensembl Gene ID:
ENSAPLG00000007157
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007426
33122996 - 33163033
40038