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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33142652_33148765_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33142652 - 33148765
Intron Length:
6114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAAAAT
5'SS Class:
major
3'SS Sequence:
TTTTTAACTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACT
Flanking Amino Acid:
HSQKLKERIQELQAQLEEFK
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
74
36.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
81.5
0.71
0.8
79.9
32.3
Minor 5ss
33.1
-1.9
3.4
48
47.7
Minor BPS
88.9
1.3
0.8
99.22
22

Associated Gene:

Gene:
FAM184B
Ensembl Gene ID:
ENSAPLG00000007157
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007426
33122996 - 33163033
40038