Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33180546_33181566_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

33180546 - 33181566

Intron Length:

1021

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATTTA

5'SS Class:

strong_major

3'SS Sequence:

CTCTTTAATGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTCTCTTTAATG

Flanking Amino Acid:

GCMDTTEEGGRKHLLLVLQK

Intron Amino Acid Position:

428

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.8

0.91

0.8

86.5

23.8

Major BPS

96.5

1.15

0.6

34.2

Major PPT

78.3

0.64

0.9

73.9

34.4

Minor 5ss

43.1

-0.8

2.9

58.1

46.5

Minor BPS

76.9

0.7

1.2

74.65

38.4

Associated Gene:

Gene:

NCAPG

Ensembl Gene ID:

ENSAPLG00000006687

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024955

33170905 - 33195397

24493

ENSAPLT00000006983

33168927 - 33195154

26228