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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33187881_33190573_F

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
33187881 - 33190573
Intron Length:
2693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGGCCT
5'SS Class:
strong_major
3'SS Sequence:
TCAATTGAAACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTGACTCAATT
Flanking Amino Acid:
VFFPLFAYANRSNQECFEEA
Intron Amino Acid Position:
776

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.7
41.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
59.6
0.22
1.1
54.7
43.7
Minor 5ss
39.5
-1.2
3.3
57
47.3
Minor BPS
60
0.39
1.8
81.26
40.6

Associated Gene:

Gene:
NCAPG
Ensembl Gene ID:
ENSAPLG00000006687
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024955
33170905 - 33195397
24493
ENSAPLT00000006983
33168927 - 33195154
26228