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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33194365_33195027_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33194365 - 33195027
Intron Length:
663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
CATAATTTAAAA
Flanking Amino Acid:
TSASAKSGSESDDEIPESVP
Intron Amino Acid Position:
1002

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
81.2
33.8
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
91.1
0.92
0.7
89.6
25.2
Minor 5ss
41.3
-1
3
58.7
45.8
Minor BPS
50
-0
1.6
59.68
39.6

Associated Gene:

Gene:
NCAPG
Ensembl Gene ID:
ENSAPLG00000006687
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024955
33170905 - 33195397
24493
ENSAPLT00000006983
33168927 - 33195154
26228