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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33225051_33226474_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33225051 - 33226474
Intron Length:
1424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
TCCATCCATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
ATCAGTTTACCA
Flanking Amino Acid:
DPLCSENSVSGRLHRHREDY
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
72.3
39.5
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
71.2
0.48
0.9
62.2
38.8
Minor 5ss
39.2
-1.2
2.8
43.8
43.8
Minor BPS
46.4
-0.2
2
57.66
42.3

Associated Gene:

Gene:
LCORL
Ensembl Gene ID:
ENSAPLG00000006384
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006626
33223573 - 33279921
56349