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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33226566_33236883_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33226566 - 33236883
Intron Length:
10318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATC
5'SS Class:
strong_major
3'SS Sequence:
TCGTTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATCAT
U12 Branch Point Sequence:
CTATCATCACTA
Flanking Amino Acid:
NRTQEQNTQQGDGVLDLSTK
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
87.7
26.2
Major BPS
75.9
0.64
1.1
77.7
35.2
Major PPT
85.4
0.8
0.8
80.4
31.6
Minor 5ss
39.6
-1.2
2.9
54
43.3
Minor BPS
45.4
-0.3
2
57.52
42.1

Associated Gene:

Gene:
LCORL
Ensembl Gene ID:
ENSAPLG00000006384
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006626
33223573 - 33279921
56349