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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33308524_33316546_R

Intron Information:

Intron Rank:
140049
Intron Class:
major
Intron Phase:
Intron Coordinates:
33308524 - 33316546
Intron Length:
8023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
AGCAATTTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
GATTACTTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
81.8
31
Major BPS
76.8
0.67
1
66
40.9
Major PPT
64.4
0.32
1
53.9
44.9
Minor 5ss
40
-1.1
2.9
57.3
41.2
Minor BPS
66.2
0.37
1.6
66.78
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022740
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021985
33308374 - 33316694
8321