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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33322781_33340282_F

Intron Information:

Intron Rank:
144597
Intron Class:
major
Intron Phase:
Intron Coordinates:
33322781 - 33340282
Intron Length:
17502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGGAA
5'SS Class:
major
3'SS Sequence:
TTATTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
67.7
32.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92
0.94
0.7
87.7
29.5
Minor 5ss
22.4
-3.2
3.3
28
44
Minor BPS
65.1
0.47
1.6
75.19
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027906
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023488
33321794 - 33340919
19126