Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33451862_33452464_R

Intron Information:

Intron Rank:

142034

Intron Class:

major

Intron Phase:

Intron Coordinates:

33451862 - 33452464

Intron Length:

603

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATGCAT

5'SS Class:

major

3'SS Sequence:

CATTACTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTAAA

U12 Branch Point Sequence:

GTTCCATTACTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.5

0.7

71.5

39.9

Major BPS

73.8

0.59

0.9

26.8

Major PPT

0.7

0.9

77.3

36.3

Minor 5ss

32.5

-2

3.4

47.3

48.1

Minor BPS

54.4

0.22

1.9

75.64

40.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023738

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022100

33451793 - 33458030

6238