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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33452505_33457912_R

Intron Information:

Intron Rank:
142035
Intron Class:
major
Intron Phase:
Intron Coordinates:
33452505 - 33457912
Intron Length:
5408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TCATATTCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
53.2
0.18
1.7
69.83
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023738
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022100
33451793 - 33458030
6238