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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33476974_33522811_F

Intron Information:

Intron Rank:
150800
Intron Class:
major
Intron Phase:
Intron Coordinates:
33476974 - 33522811
Intron Length:
45838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAACAAAT
5'SS Class:
major
3'SS Sequence:
TAATTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AATTTCTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.2
73.4
37.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83
0.74
0.9
77
36.7
Minor 5ss
40.8
-1
3
54.9
43.5
Minor BPS
53.6
-0
1.8
59.92
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031033
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031029
33476848 - 33531400
54553