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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33533911_33535301_F

Intron Information:

Intron Rank:
150811
Intron Class:
major
Intron Phase:
Intron Coordinates:
33533911 - 33535301
Intron Length:
1391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGATG
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTATGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
TTCCCCTTTATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
78.6
37.3
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
71.7
0.49
1
68
36.3
Minor 5ss
30.4
-2.2
3.2
38.7
46.6
Minor BPS
59.7
0.16
1.7
64.92
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031033
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038638
33529806 - 33535660
5855