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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_3365306_3371375_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3365306 - 3371375
Intron Length:
6070

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTCTTT
5'SS Class:
major
3'SS Sequence:
CATTTCTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CATTTCTGAACA
Flanking Amino Acid:
CRTWQLHEDFRIRGTFCKSI
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
71.6
40.9
Major BPS
100
1.24
0.5
100
0
Major PPT
69.8
0.44
1
65.8
39.5
Minor 5ss
48.5
-0.1
3.2
73.2
43.6
Minor BPS
67.8
0.55
1.4
73.13
38.5

Associated Gene:

Gene:
WDFY3
Ensembl Gene ID:
ENSAPLG00000016174
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016928
3365139 - 3499808
134670
ENSAPLT00000035211
3364321 - 3498808
134488
ENSAPLT00000027095
3364321 - 3498808
134488