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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33777435_33777735_R

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33777435 - 33777735
Intron Length:
301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGAGCC
5'SS Class:
major
3'SS Sequence:
TGTCTTGTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CTGCTCACAGCT
Flanking Amino Acid:
RLHPSTFEIPAFQGRSSTED
Intron Amino Acid Position:
1571

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
0.9
64.8
33.2
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
82
0.72
0.9
76.5
37.5
Minor 5ss
26.4
-2.7
3.2
31
36.4
Minor BPS
42
-0.5
1.9
58.29
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024706
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040007
33775529 - 33790964
15436