About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33779234_33779426_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33779234 - 33779426
Intron Length:
193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTGTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
GTGTCCTGACTC
Flanking Amino Acid:
LLTAMAFFAELMKEPPLEKR
Intron Amino Acid Position:
1336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.6
41.7
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
78.3
0.64
0.9
72.4
37.7
Minor 5ss
24.7
-2.9
3
28.6
43.8
Minor BPS
53.6
0.09
1.8
63.88
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024706
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040007
33775529 - 33790964
15436