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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33779539_33779735_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33779539 - 33779735
Intron Length:
197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
GCTCTTTGTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAC
U12 Branch Point Sequence:
CCCACTTGACCG
Flanking Amino Acid:
TYAEGMCLLTSVLLRAQLIS
Intron Amino Acid Position:
1298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72.1
31.2
Major BPS
65.1
0.38
1
57
39.5
Major PPT
77
0.61
0.9
72.2
37.8
Minor 5ss
26.3
-2.7
3.1
33.4
42
Minor BPS
42.7
-0.6
1.8
39.88
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024706
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040007
33775529 - 33790964
15436