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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33780654_33780929_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33780654 - 33780929
Intron Length:
276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTACGTTCA
5'SS Class:
major
3'SS Sequence:
CATTTCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
GTGCTCTCATTT
Flanking Amino Acid:
AHQPSAESLTVTRAISEMVS
Intron Amino Acid Position:
1190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.4
0.36
1.2
62.1
39
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
80.5
0.69
0.8
74.1
30.6
Minor 5ss
42.3
-0.8
3
59.8
44.6
Minor BPS
46.7
-0.1
1.8
61.99
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024706
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040007
33775529 - 33790964
15436