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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33781803_33781896_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33781803 - 33781896
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TGCATCTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTGCAT
U12 Branch Point Sequence:
GGTTCTTGCATC
Flanking Amino Acid:
QLRTSIQIAEVVCKNVPKKQ
Intron Amino Acid Position:
1033

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
62.7
0.32
1.4
75
39.9
Major PPT
78.3
0.64
0.9
69.1
41.7
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
48.4
-0.1
1.9
60.57
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024706
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040007
33775529 - 33790964
15436