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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33782495_33782693_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33782495 - 33782693
Intron Length:
199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
CTCGCCCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTCCAG
U12 Branch Point Sequence:
TTGTTCTTCCTC
Flanking Amino Acid:
EDCRDGVAFQTRGAYLPFGA
Intron Amino Acid Position:
954

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
74.7
37
Major BPS
44.3
-0.3
1.8
58.2
48.3
Major PPT
73.1
0.52
0.8
65.6
30.3
Minor 5ss
26.2
-2.7
2.9
29.6
43.4
Minor BPS
41.8
-0.6
3.5
64.88
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024706
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040007
33775529 - 33790964
15436