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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33786191_33786312_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33786191 - 33786312
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCCCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCGGCAT
U12 Branch Point Sequence:
TCGCCCAGCATT
Flanking Amino Acid:
DPDVLNALLQDMTLTPHNLL
Intron Amino Acid Position:
526

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
75.2
35.1
Major BPS
48.9
-0
1.5
59.3
47.1
Major PPT
82.5
0.73
0.7
77.7
24.2
Minor 5ss
32.6
-2
3.7
46.4
48.9
Minor BPS
42.4
-0.5
2.1
59.04
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024706
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040007
33775529 - 33790964
15436