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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33787362_33787447_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33787362 - 33787447
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTCAGTACT
5'SS Class:
major
3'SS Sequence:
GGATCTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTGGAT
U12 Branch Point Sequence:
TGTGCCTCCACG
Flanking Amino Acid:
GLLGALARCDEPAMAEKLPQ
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.3
75.7
40.1
Major BPS
50.1
0
1.4
51.1
44.3
Major PPT
73.3
0.52
1
65.9
40.6
Minor 5ss
34.3
-1.8
2.7
45.7
41.7
Minor BPS
48.6
-0.2
2.2
60.32
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024706
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040007
33775529 - 33790964
15436