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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33788111_33788464_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33788111 - 33788464
Intron Length:
354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGACAT
U12 Branch Point Sequence:
TCTTCCTCTCCT
Flanking Amino Acid:
TVQDASRVTKNLLSFLEALE
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
36.7
Major BPS
67.6
0.44
1.2
75
40
Major PPT
86.6
0.82
0.8
81.1
30.9
Minor 5ss
33
-1.9
3.3
46.8
48.5
Minor BPS
42.3
-0.5
3.7
76.35
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024706
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040007
33775529 - 33790964
15436