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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33789676_33789877_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33789676 - 33789877
Intron Length:
202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACGGTCC
5'SS Class:
major
3'SS Sequence:
GTTCTCTTCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
GGGGCTCTGACC
Flanking Amino Acid:
ITVGKLLSTNALQCIPFMRV
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
58.9
41.1
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
81.7
0.71
0.8
76.6
32
Minor 5ss
37.4
-1.4
3.4
51.3
45.5
Minor BPS
46
-0.3
1.7
51.59
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024706
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040007
33775529 - 33790964
15436