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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33790044_33790176_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33790044 - 33790176
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATGG
5'SS Class:
strong_major
3'SS Sequence:
GCCTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAG
U12 Branch Point Sequence:
GGCTCTTGAGCC
Flanking Amino Acid:
EVSWDLTAAQGVTEDTKVAA
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
68.5
39.2
Major BPS
59.9
0.25
1.6
59.3
47.1
Major PPT
82.4
0.73
0.8
79.7
32.2
Minor 5ss
31.9
-2.1
3
38.5
46.6
Minor BPS
48.8
-0.1
1.7
56.82
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024706
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040007
33775529 - 33790964
15436