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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33790300_33790633_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33790300 - 33790633
Intron Length:
334

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
GCTCTGTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TGCAACTGATCC
Flanking Amino Acid:
TLLERLQDEEGDRAQTYCEL
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
70.5
0.46
0.9
61.1
40.1
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
44.7
-0.4
1.9
54.16
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024706
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040007
33775529 - 33790964
15436