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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33790759_33790939_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33790759 - 33790939
Intron Length:
181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
TCCTTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACCGAT
U12 Branch Point Sequence:
CTTTCCTTCCTT
Flanking Amino Acid:
MERLRALSGVGCWPRRSR
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
58.8
40.6
Major BPS
49.4
-0
1.2
47.8
37.7
Major PPT
84.8
0.78
0.7
76.7
32
Minor 5ss
24.6
-2.9
3.4
32.5
42.6
Minor BPS
45.4
-0.2
3.6
79.08
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024706
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040007
33775529 - 33790964
15436