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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33826181_33834192_R

Intron Information:

Intron Rank:
137744
Intron Class:
major
Intron Phase:
Intron Coordinates:
33826181 - 33834192
Intron Length:
8012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGACCG
5'SS Class:
major
3'SS Sequence:
TGTGCATATATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TGAAAATTAAGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
61.7
42.9
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
65.6
0.35
1
58.9
41.3
Minor 5ss
38.4
-1.3
3
48.6
47.1
Minor BPS
45.2
-0.3
2
56.59
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021631
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028077
33826114 - 33855050
28937