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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33834317_33837986_R

Intron Information:

Intron Rank:
137745
Intron Class:
major
Intron Phase:
Intron Coordinates:
33834317 - 33837986
Intron Length:
3670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTTAGTGAC
5'SS Class:
major
3'SS Sequence:
TCACTATAATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ATCACTATAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.2
70.7
33.5
Major BPS
80
0.75
1
78.6
31
Major PPT
60.7
0.24
1
60.4
39.4
Minor 5ss
31.1
-2.2
3
36.7
34
Minor BPS
55.8
0.26
1.6
71.81
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021631
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038883
33825780 - 33855050
29271
ENSAPLT00000033388
33833556 - 33847467
13912
ENSAPLT00000028077
33826114 - 33855050
28937