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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33844185_33854627_R

Intron Information:

Intron Rank:
137747
Intron Class:
major
Intron Phase:
Intron Coordinates:
33844185 - 33854627
Intron Length:
10443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGAAG
5'SS Class:
major
3'SS Sequence:
TTTTCTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTATTTCTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
71.5
39.9
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
89
0.88
0.8
84.5
30.4
Minor 5ss
31.7
-2.1
3.1
39.3
46.2
Minor BPS
49.6
0.05
1.9
72.66
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021631
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038883
33825780 - 33855050
29271
ENSAPLT00000028077
33826114 - 33855050
28937