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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33888425_33893502_R

Intron Information:

Intron Rank:
137518
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
33888425 - 33893502
Intron Length:
5078

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTACAAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTTTTGTTACTG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
76.2
39.9
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
53.5
0.08
1.1
53.8
39.5
Minor 5ss
33
-1.9
3.5
49.2
47.1
Minor BPS
49.7
-0.1
2.3
66.07
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021462
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030279
33888388 - 33900842
12455