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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33893568_33900627_R

Intron Information:

Intron Rank:
137519
Intron Class:
major
Intron Phase:
Intron Coordinates:
33893568 - 33900627
Intron Length:
7060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
TTCATATATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTCTTCATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
76.3
34
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.6
0.6
1
74.3
39.5
Minor 5ss
47
-0.3
2.8
67.3
37.5
Minor BPS
70.6
0.64
1.7
82.43
32.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021462
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030279
33888388 - 33900842
12455