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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_3391458_3394417_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3391458 - 3394417
Intron Length:
2960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAA
U12 Branch Point Sequence:
CTTTTGCTAACA
Flanking Amino Acid:
GYNFLCDLLLRLEQAKEAES
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
75.9
35.2
Major BPS
70.6
0.51
1
73.3
31.3
Major PPT
85.8
0.81
0.7
85.6
29.2
Minor 5ss
44.8
-0.6
2.6
56.7
47.6
Minor BPS
49.9
-0
2.3
71.21
41.3

Associated Gene:

Gene:
WDFY3
Ensembl Gene ID:
ENSAPLG00000016174
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027095
3364321 - 3498808
134488
ENSAPLT00000025718
3357131 - 3501171
144041
ENSAPLT00000043636
3357131 - 3501171
144041
ENSAPLT00000020887
3371376 - 3501171
129796
ENSAPLT00000035211
3364321 - 3498808
134488
ENSAPLT00000016928
3365139 - 3499808
134670
ENSAPLT00000033481
3371376 - 3498808
127433