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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_3399427_3406302_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
3399427 - 3406302
Intron Length:
6876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CCAATCTGCATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
CCACCCCCAATC
Flanking Amino Acid:
ILLQGSNTNAGIFREFGGAR
Intron Amino Acid Position:
588

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.5
32.7
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
58.5
0.19
0.9
52.8
36.4
Minor 5ss
32.1
-2
3.1
40.8
45.4
Minor BPS
44.6
-0.4
1.8
49.71
40.6

Associated Gene:

Gene:
WDFY3
Ensembl Gene ID:
ENSAPLG00000016174
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027095
3364321 - 3498808
134488
ENSAPLT00000025718
3357131 - 3501171
144041
ENSAPLT00000043636
3357131 - 3501171
144041
ENSAPLT00000020887
3371376 - 3501171
129796
ENSAPLT00000035211
3364321 - 3498808
134488
ENSAPLT00000016928
3365139 - 3499808
134670
ENSAPLT00000033481
3371376 - 3498808
127433