Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_3410854_3421112_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3410854 - 3421112

Intron Length:

10259

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACTGAAC

5'SS Class:

major

3'SS Sequence:

TTCTGTCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

TAATGGTGATTT

Flanking Amino Acid:

PWGTPALSRKRHTYHSVSTP

Intron Amino Acid Position:

809

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.1

0.5

1.1

66.1

39.5

Major BPS

84.4

0.85

1.1

34.5

Major PPT

82.9

0.74

0.8

77.3

31.5

Minor 5ss

31.6

-2.1

3.3

42.7

44.4

Minor BPS

39.2

-0.7

2.5

58.69

44.5

Associated Gene:

Gene:

WDFY3

Ensembl Gene ID:

ENSAPLG00000016174

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035211

3364321 - 3498808

134488

ENSAPLT00000033481

3371376 - 3498808

127433

ENSAPLT00000027095

3364321 - 3498808

134488

ENSAPLT00000025718

3357131 - 3501171

144041

ENSAPLT00000043636

3357131 - 3501171

144041