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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_34154030_34154732_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34154030 - 34154732
Intron Length:
703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TCATTTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTCATTTATTT
Flanking Amino Acid:
AFSPYKKLRRIDLSNNQISE
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
80.9
31.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
83.6
0.76
0.8
81.6
34.5
Minor 5ss
39.4
-1.2
2.7
51.9
37.5
Minor BPS
56.8
0.29
1.7
78.23
38.3

Associated Gene:

Gene:
SLIT2
Ensembl Gene ID:
ENSAPLG00000009781
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010276
33973902 - 34228146
254245
ENSAPLT00000010190
33973902 - 34228295
254394
ENSAPLT00000045581
33973902 - 34228295
254394
ENSAPLT00000022588
33973902 - 34228295
254394