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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_34157394_34157521_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34157394 - 34157521
Intron Length:
128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTATGTATG
5'SS Class:
major
3'SS Sequence:
TTCTTCATGAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTTCTTCATG
Flanking Amino Acid:
TFSPLRAIQTLHLAQNPFIC
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
69.2
41
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
65
0.34
1.2
67.8
36.8
Minor 5ss
48
-0.2
2.5
65.5
39.9
Minor BPS
66.2
0.36
1.8
74.4
38.6

Associated Gene:

Gene:
SLIT2
Ensembl Gene ID:
ENSAPLG00000009781
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010276
33973902 - 34228146
254245
ENSAPLT00000010190
33973902 - 34228295
254394
ENSAPLT00000045581
33973902 - 34228295
254394
ENSAPLT00000022588
33973902 - 34228295
254394