About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_34168905_34172025_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34168905 - 34172025
Intron Length:
3121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TACTGTGTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACAAAC
U12 Branch Point Sequence:
GCTTCTGTTACT
Flanking Amino Acid:
IFKKLPQLRKINLSNNKITD
Intron Amino Acid Position:
562

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
77.1
31.3
Major BPS
50.8
0.02
0.9
57
25.1
Major PPT
62.9
0.29
1
58.1
41.8
Minor 5ss
35.4
-1.7
3.2
46.1
42.2
Minor BPS
49.2
0.02
2.3
72.27
44.8

Associated Gene:

Gene:
SLIT2
Ensembl Gene ID:
ENSAPLG00000009781
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045581
33973902 - 34228295
254394
ENSAPLT00000022588
33973902 - 34228295
254394
ENSAPLT00000010276
33973902 - 34228146
254245
ENSAPLT00000010190
33973902 - 34228295
254394