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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_34172170_34174083_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34172170 - 34174083
Intron Length:
1914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
CTTATTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
CTGTCCTGAAGC
Flanking Amino Acid:
MFKGLESLKTLMLRSNRVSC
Intron Amino Acid Position:
610

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
73
36.6
Major BPS
69.6
0.49
1
59.5
39
Major PPT
85.3
0.79
0.7
84
30.8
Minor 5ss
40.2
-1.1
3.4
62.5
42.2
Minor BPS
58
0.23
1.8
66.89
44.7

Associated Gene:

Gene:
SLIT2
Ensembl Gene ID:
ENSAPLG00000009781
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010276
33973902 - 34228146
254245
ENSAPLT00000010190
33973902 - 34228295
254394
ENSAPLT00000045581
33973902 - 34228295
254394
ENSAPLT00000022588
33973902 - 34228295
254394