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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_34182332_34182575_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34182332 - 34182575
Intron Length:
244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
TGTATATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTTGTATATTT
Flanking Amino Acid:
SFSNMTQLLTLILSYNRLRC
Intron Amino Acid Position:
805

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
78.8
30.7
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
81.3
0.7
0.9
77.9
40.4
Minor 5ss
46.3
-0.4
2.8
64.1
41.5
Minor BPS
48.2
-0
2.2
76.24
41.2

Associated Gene:

Gene:
SLIT2
Ensembl Gene ID:
ENSAPLG00000009781
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045581
33973902 - 34228295
254394
ENSAPLT00000022588
33973902 - 34228295
254394
ENSAPLT00000010276
33973902 - 34228146
254245