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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_34193091_34194448_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34193091 - 34194448
Intron Length:
1358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTATTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTTCTGTATTA
Flanking Amino Acid:
HLKEGEKDGFWCTCADGFEG
Intron Amino Acid Position:
958

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
82.9
29.8
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
78.6
0.64
0.8
73.3
36
Minor 5ss
45.6
-0.5
3
63.7
43.1
Minor BPS
53.8
0.12
2.2
74.5
38.1

Associated Gene:

Gene:
SLIT2
Ensembl Gene ID:
ENSAPLG00000009781
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010276
33973902 - 34228146
254245
ENSAPLT00000010190
33973902 - 34228295
254394
ENSAPLT00000045581
33973902 - 34228295
254394
ENSAPLT00000022588
33973902 - 34228295
254394