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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_34194589_34207211_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34194589 - 34207211
Intron Length:
12623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
CATTACATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACTGAGT
Flanking Amino Acid:
YTCLCPPEYTGELCEEKLDF
Intron Amino Acid Position:
1005

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
84.3
26.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
75.3
0.57
0.9
70.8
39.1
Minor 5ss
34
-1.8
3.5
46.9
48.4
Minor BPS
50.8
0.1
2.2
81.53
39.9

Associated Gene:

Gene:
SLIT2
Ensembl Gene ID:
ENSAPLG00000009781
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010276
33973902 - 34228146
254245
ENSAPLT00000010190
33973902 - 34228295
254394
ENSAPLT00000045581
33973902 - 34228295
254394
ENSAPLT00000022588
33973902 - 34228295
254394